Thanks for updating us with your findings; it is always good to know what causes odd issues!
A couple of points,
First, having a voltage difference is normal when comparing a neutral return to a ground return. Neutral is current carrying; earth ground isn't and should never be current carrying, that why you will see a difference with a DVM.
What is most likely happening is when you connect your PC to the GT, you are making the earth ground bond THRU the CPU card of the GT because the ground is floating at the computers receptacle.
Computers have all sorts of emi noise and themselfs depend on proper earth grounding, sending that noise into the GT is what causes the issues and in your case, your PC without proper grounding is shown to cause shutdown issues
The GT's serial port is not opto-isolated .. It directly connects to the GT's CPU board which IS opto-isoltaed to the rest of the unit. I have pointed this out to Xantrex before and your situation shows this can be a rare but real problem source.
An important FYI:
Changing outlets from two to three prong without adding the proper wiring is
illegal and can
kill someone with a mis-wired appliance, that’s the whole purpose to make sure live AC can't be in-touch’s reach. If someone touch’s a water-pipe, water source and an ungrounded appliance, death can be the result, I’m not being dramatic here, this is WHY we have electrical codes
I realize this is more common in older houses, I hope you can take the time to either put back to two prongs OR pull proper wiring. By the way GFI's are useless without true 3 wire wiring.
Hopefully, you can now enjoy your new system and log many wonderful hours with GT-View! Again, thank you for share this information!