In the end its all about the cost, what ever in the installed system provides the lowest cost and works for your application.
Two panels vs one panel may have higher mounting hardware costs.
Two panels may give you more voltage options
Two panels are easier to manage by yourself for installation
Lower Efficiency panels will cover more area and they do somewhat lower roof temperatures. I have found that the solar panels heat up and they still radiate the heat back onto the roof as a guess, maybe a 50% reduction if you have a 4" air space. The smaller the air space the higher the IR transmission from the panel to the roof
As you will find as you move forward into you solar project, there is no right and wrong answers. It all about what works best for your application and your budget.
I always recommend people consider factory seconds, like
www.sunelec.com sells, that is usally the single biggest savings one can do for a system without effecting the harvest capabilities.